Home | Trees | Indices | Help |
|
---|
|
Monomer and element library data classes. The Library classes are used for the identification and construction of biopolymers and ligands.
|
|||
ElementDesc Element description class returned by library_get_element_desc(). |
|||
MonomerDesc Monomer description class returned by library_get_monomer_desc(). |
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|||
|
|
|||
DATA_PATH =
|
|||
ELEMENT_DATA_PATH =
|
|||
MMLIB_MONOMER_DATA_PATH =
|
|||
RCSB_MONOMER_DATA_FILE =
|
|||
RCSB_MONOMER_DATA_PATH =
|
|||
ELEMENT_CACHE =
|
|||
MONOMER_RES_NAME_CACHE =
|
|||
ELEMENT_CIF_FILE = [[[{'van_der_walls_radius': '1.200000', 'na
|
|||
MMLIB_MONOMERS_CIF = [[[{'one_letter_code': 'G', 'chem_type':
|
|||
RCSB_USE_ZIP = None hash(x) |
|||
RCSB_ZIP = None hash(x) |
|||
ELEMENT_SYMBOL_DICT =
|
|||
AMINO_ACID3_LIST =
|
|||
AMINO_ACID31_DICT =
|
|||
AMINO_ACID13_DICT =
|
|||
NUCLEIC_ACID_LIST =
|
|||
NUCLEIC_ACID_RES_NAME_DICT =
|
|||
ALT_RES_NAME_DICT =
|
|||
JUNK =
|
|||
MMLIB_PATH =
|
|||
__package__ =
|
|
Loads/caches/returns an instance of the ElementDesc class for the given element symbol. The source of the element data is the mmLib/Data/elements.cif file. |
Returns True if the zipfile version of the monomer library should be used, or False if the uncompressed directory hierarchy should be used. If the |
Returns the open file object for the mmCIF monomer library file if it is found as an uncompressed mmCIF file at the path: mmLib/Data/Monomers/NAME[0]/NAME.cif |
Returns the open file object for the mmCIF monomer library file if it is found from library_open_monomer_lib_directory() or library_open_monomer_lib_zipfile(). library_open_monomer_lib_directory() is checked first because loading the file from the directory sturcture is much faster than loading it from a zipfile. |
Try everything we can possibly think of to extract the element symbol from the atom name. If available, use the monomer dictionary to help narrow down the search. |
|
ELEMENT_DATA_PATH
|
MMLIB_MONOMER_DATA_PATH
|
RCSB_MONOMER_DATA_FILE
|
RCSB_MONOMER_DATA_PATH
|
ELEMENT_CIF_FILE
|
MMLIB_MONOMERS_CIF
|
ELEMENT_SYMBOL_DICT
|
AMINO_ACID3_LIST
|
AMINO_ACID31_DICT
|
AMINO_ACID13_DICT
|
NUCLEIC_ACID_RES_NAME_DICT
|
ALT_RES_NAME_DICT
|
Home | Trees | Indices | Help |
|
---|
Generated by Epydoc 3.0.1 on Mon Jun 27 14:43:14 2011 | http://epydoc.sourceforge.net |