Package mmLib :: Module Structure :: Class NucleicAcidResidue
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Class NucleicAcidResidue

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object --+        
         |        
  Fragment --+    
             |    
       Residue --+
                 |
                NucleicAcidResidue

A subclass of Residue representing one nuclic acid in a strand of DNA or RNA.

Instance Methods [hide private]
 
__deepcopy__(self, memo) source code
 
is_standard_residue(self)
Returns True if the Fragment/Residue object is one of the PDB defined standard residues.
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is_nucleic_acid(self)
Returns True if the Fragment is a Nucleic Acid residue.
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is_water(self)
Returns True if the Fragment is a water molecule, returns False otherwise.
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Inherited from Residue: __str__, create_bonds, get_offset_residue

Inherited from Fragment: __contains__, __ge__, __getitem__, __gt__, __init__, __iter__, __le__, __len__, __lt__, add_atom, count_all_atoms, count_atoms, get_atom, get_chain, get_equivalent_atom, get_model, get_offset_fragment, get_structure, index, is_amino_acid, iter_all_atoms, iter_atoms, iter_bonds, remove_atom, set_chain_id, set_default_alt_loc, set_fragment_id, set_model_id, set_res_name

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__deepcopy__(self, memo)

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Overrides: Fragment.__deepcopy__

is_standard_residue(self)

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Returns True if the Fragment/Residue object is one of the PDB defined standard residues. PDB standard residues are amino and nucleic acid residues.

Overrides: Fragment.is_standard_residue

is_nucleic_acid(self)

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Returns True if the Fragment is a Nucleic Acid residue.

Overrides: Fragment.is_nucleic_acid

is_water(self)

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Returns True if the Fragment is a water molecule, returns False otherwise.

Overrides: Fragment.is_water