Package mmLib :: Module PDB :: Class DBREF
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Class DBREF

source code

object --+        
         |        
      dict --+    
             |    
     PDBRecord --+
                 |
                DBREF

The DBREF record provides cross-reference links between PDB sequences and the corresponding database entry or entries. A cross reference to the sequence database is mandatory for each peptide chain with a length greater than ten (10) residues. For nucleic acid entries a DBREF record pointing to the Nucleic Acid Database (NDB) is mandatory when the corresponding entry exists in NDB.

Instance Methods [hide private]

Inherited from PDBRecord: __str__, read, reccat, reccat_dictlist, reccat_list, reccat_multi, reccat_tuplelist, write

Inherited from dict: __cmp__, __contains__, __delitem__, __eq__, __ge__, __getattribute__, __getitem__, __gt__, __init__, __iter__, __le__, __len__, __lt__, __ne__, __new__, __repr__, __setitem__, __sizeof__, clear, copy, fromkeys, get, has_key, items, iteritems, iterkeys, itervalues, keys, pop, popitem, setdefault, update, values

Inherited from object: __delattr__, __format__, __reduce__, __reduce_ex__, __setattr__, __subclasshook__

Class Variables [hide private]
  _name = 'DBREF '
hash(x)
  _field_list = [('idCode', 8, 11, 'string', 'rjust', None), ('c...
hash(x)

Inherited from dict: __hash__

Properties [hide private]

Inherited from object: __class__

Class Variable Details [hide private]

_field_list

hash(x)

Value:
[('idCode', 8, 11, 'string', 'rjust', None),
 ('chain_ID', 13, 13, 'string', 'rjust', None),
 ('seqBegin', 15, 18, 'integer', 'rjust', None),
 ('insertBegin', 19, 19, 'string', 'rjust', None),
 ('seqEnd', 21, 24, 'integer', 'rjust', None),
 ('insertEnd', 25, 25, 'string', 'rjust', None),
 ('database', 27, 32, 'string', 'ljust', None),
 ('dbAccession', 34, 41, 'string', 'ljust', None),
...