Package mmLib :: Module PDB :: Class SEQADV
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Class SEQADV

source code

object --+        
         |        
      dict --+    
             |    
     PDBRecord --+
                 |
                SEQADV

The SEQADV record identifies conflicts between sequence information in the ATOM records of the PDB entry and the sequence database entry given on DBREF. Please note that these records were designed to identify differences and not errors. No assumption is made as to which database contains the correct data. PDB may include REMARK records in the entry that reflect the depositor's view of which database has the correct sequence.

Instance Methods [hide private]

Inherited from PDBRecord: __str__, read, reccat, reccat_dictlist, reccat_list, reccat_multi, reccat_tuplelist, write

Inherited from dict: __cmp__, __contains__, __delitem__, __eq__, __ge__, __getattribute__, __getitem__, __gt__, __init__, __iter__, __le__, __len__, __lt__, __ne__, __new__, __repr__, __setitem__, __sizeof__, clear, copy, fromkeys, get, has_key, items, iteritems, iterkeys, itervalues, keys, pop, popitem, setdefault, update, values

Inherited from object: __delattr__, __format__, __reduce__, __reduce_ex__, __setattr__, __subclasshook__

Class Variables [hide private]
  _name = 'SEQADV'
hash(x)
  _field_list = [('idCode', 8, 11, 'string', 'rjust', None), ('r...
hash(x)

Inherited from dict: __hash__

Properties [hide private]

Inherited from object: __class__

Class Variable Details [hide private]

_field_list

hash(x)

Value:
[('idCode', 8, 11, 'string', 'rjust', None),
 ('resName', 13, 15, 'string', 'rjust', None),
 ('chainID', 17, 17, 'string', 'rjust', None),
 ('seqNum', 19, 22, 'integer', 'rjust', None),
 ('iCode', 23, 23, 'string', 'rjust', None),
 ('database', 25, 28, 'string', 'ljust', None),
 ('dbIDCode', 30, 38, 'string', 'ljust', None),
 ('dbRes', 40, 42, 'string', 'rjust', None),
...