Package mmLib :: Module PDB :: Class SEQRES
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Class SEQRES

source code

object --+        
         |        
      dict --+    
             |    
     PDBRecord --+
                 |
                SEQRES

The SEQRES records contain the amino acid or nucleic acid sequence of residues in each chain of the macromolecule that was studied.

Instance Methods [hide private]
 
process(self, recs)
Returns a dictionary with attributes chain_id, num_res, and sequence_list
source code

Inherited from PDBRecord: __str__, read, reccat, reccat_dictlist, reccat_list, reccat_multi, reccat_tuplelist, write

Inherited from dict: __cmp__, __contains__, __delitem__, __eq__, __ge__, __getattribute__, __getitem__, __gt__, __init__, __iter__, __le__, __len__, __lt__, __ne__, __new__, __repr__, __setitem__, __sizeof__, clear, copy, fromkeys, get, has_key, items, iteritems, iterkeys, itervalues, keys, pop, popitem, setdefault, update, values

Inherited from object: __delattr__, __format__, __reduce__, __reduce_ex__, __setattr__, __subclasshook__

Class Variables [hide private]
  _name = 'SEQRES'
hash(x)
  _multi_record = 'serNum'
  _field_list = [('serNum', 9, 10, 'integer', 'rjust', None), ('...
hash(x)

Inherited from dict: __hash__

Properties [hide private]

Inherited from object: __class__

Class Variable Details [hide private]

_field_list

hash(x)

Value:
[('serNum', 9, 10, 'integer', 'rjust', None),
 ('chainID', 12, 12, 'string', 'rjust', None),
 ('numRes', 14, 17, 'integer', 'rjust', None),
 ('resName1', 20, 22, 'string', 'rjust', None),
 ('resName2', 24, 26, 'string', 'rjust', None),
 ('resName3', 28, 30, 'string', 'rjust', None),
 ('resName4', 32, 34, 'string', 'rjust', None),
 ('resName5', 36, 38, 'string', 'rjust', None),
...