cl /O2 /W3 /WX /I "\Program Files\Java\jdk1.5.0_11\include" /I "\Program Files\Java\jdk1.5.0_11\include\win32"  NucleotideLikelihoodCore.c /LD /FeNucleotideLikelihoodCore.dll

cl /O2 /W3 /WX /I "\Program Files\Java\jdk1.5.0_11\include" /I "\Program Files\Java\jdk1.5.0_11\include\win32"  AminoAcidLikelihoodCore.c /LD /FeAminoAcidLikelihoodCore.dll

