
REBASE version 501                                              NEWS.501

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   Copyright (c)  Dr. Richard J. Roberts, 2014.   All rights reserved.
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   REBASE The Restriction Enzyme Database -      http://rebase.neb.com
   REBASE NEWS On-line -        http://rebase.neb.com/rebase/NEWS.html
   REBASE Mobile -         http://rebase.neb.com/rebase/rebmobile.html
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   Newly added restriction enzymes:     (not yet commercially available)

   Cdi11397I	 Type IIG	 GCGCAG	 ** new prototype
   Cpa6013I	 Type II	 CG^CG	 FnuDII isoschizomer
   Csa8421I	 Type IIG	 specificity unknown
   EcoE1140I	 Type IIG	 ACCYAC	 ** new prototype
   HpyUM032XIII	 Type IIG	 CYANNNNNNNTRG	 ** new prototype
   HpyUM032XIV	 Type IIG	 GAAAG	 ** new prototype
   NgoAVII	 Type II	 GCCGC(7/7)	 ** new prototype
   R1.BsuMI	 Type II	 CTCGAG	 (prototype XhoI)
   R2.BsuMI	 Type II	 CTCGAG	 (prototype XhoI)
   R3.BsuMI	 Type II	 CTCGAG	 (prototype XhoI)
   Sty13348III	 Type IIG	 GATCAG	 ** new prototype
   Vtu19109I	 Type IIG	 CACRAYC	 ** new prototype


   Note:        Cpa525I has been deleted from REBASE.

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   Crystal data added:

                NgoAVII - PDB records 4RCT, 4RD5, and 4RDM

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   Genomes analyzed this month:

        Closed genomes (50 new since 11/30/2014) -

        Bacillus cereus 03BB87
        Bacillus species WP8
        Bacillus subtilis 168
        Bacillus subtilis PS832
        Bacillus thuringiensis serovar galleriae HD-29
        Bifidobacterium kashiwanohense PV20-2
        Bifidobacterium pseudolongum PV8-2
        Borrelia miyamotoi CT14D4
        Bradyrhizobium japonicum E109
        Campylobacter jejuni subsp. jejuni YH001
        Cellulophaga baltica 18
        Citrobacter freundii CF8698
        Clostridium baratii Sullivan
        Clostridium botulinum 202F
        Clostridium pasteurianum
        Clostridium pasteurianum
        Clostridium sordellii JGS6382
        Deinococcus swuensis DY59
        Escherichia coli 94-3024
        Escherichia coli O157:H7 SS52
        Escherichia coli RM9387
        Frischella perrara PEB0191
        Geoglobus acetivorans SBH6
        Helicobacter canadensis MIT 98-5491
        Hymenobacter species DG25B
        Lactococcus lactis subsp. lactis S0
        Legionella hackeliae
        Listeria monocytogenes NTSN
        Methanoplasma termitum Mpt1
        Mycobacterium abscessus subsp. bolletii CCUG 48898 =
        Mycobacterium tuberculosis Kurono
        Mycoplasma mycoides subsp. mycoides izsam_mm5713
        Myroides species A21
        Neisseria meningitidis M10208
        Neisseria meningitidis M7124
        Neisseria meningitidis NM3682
        Neisseria meningitidis NM3683
        Neisseria meningitidis NM3686
        Parvimonas micra KCOM 1535
        Peptoclostridium difficile 630Derm
        Pseudoalteromonas species OCN003
        Pseudomonas parafulva CRS01-1
        Pseudomonas putida S12
        Saccharibacteria oral taxon TM7x
        Salmonella enterica subsp. enterica serovar Infantis 1326/28
        Sphingopyxis species Kp5.2
        Thermotoga species 2812B
        Thermotoga species Cell2
        Xenorhabdus nematophila AN6/1
        Yersinia ruckeri CSF007-82

    Whole genome shotguns (181 new since 11/30/2014) -

        Acetobacter tropicalis
        Acinetobacter baumannii A144
        Acinetobacter baumannii A33405
        Acinetobacter species MII
        Acinetobacter species MN12
        Aeromonas media ARB13
        Aeromonas media ARB20
        Aeromonas species AE122
        Aeromonas species AE235
        Aeromonas veronii ARB3
        Agrobacterium rhizogenes
        Alcanivorax species 97CO-5
        Algibacter lectus
        Algibacter lectus
        Alpha proteobacterium QL1
        Amycolatopsis species MJM2582
        Anoxybacillus flavithermus 25
        Aquabacterium species NJ1
        Bacillus alcalophilus ATCC 27647 AV1934
        Bacillus cereus tsu1
        Bacillus coagulans GBI-30, 6086
        Bacillus megaterium
        Bacillus mojavensis RRC 101
        Bacillus niacini
        Bacillus pumilus INR7
        Bacillus simplex P558
        Bacillus species BSC154
        Bacillus species FJAT-14578
        Bacillus subtilis GB03
        Bacillus subtilis GXA-28
        Bacillus subtilis NKYL29
        Borrelia crocidurae 03-02
        Bosea species LC85
        Bradyrhizobium japonicum Is-34
        Burkholderia cepacia DWS 16B-4
        Burkholderia cepacia DWS 37UF10B-2
        Burkholderia mallei China5
        Burkholderia mallei gladioli
        Burkholderia mallei SR092700I
        Burkholderia multivorans DWS 42B-1
        Burkholderia pseudomallei BDD
        Burkholderia pseudomallei BDE
        Burkholderia pseudomallei BDI
        Burkholderia pseudomallei BDM
        Burkholderia pseudomallei BDT
        Burkholderia pseudomallei BDZ
        Burkholderia pseudomallei BEB
        Burkholderia pseudomallei BEC
        Burkholderia pseudomallei BED
        Burkholderia pseudomallei BEF
        Burkholderia pseudomallei BEG
        Burkholderia pseudomallei BEH
        Burkholderia pseudomallei BES
        Burkholderia pseudomallei BFD
        Burkholderia pseudomallei BGH
        Burkholderia pseudomallei BGQ
        Burkholderia pseudomallei BGS
        Burkholderia pseudomallei Pasteur 52237
        Burkholderia pseudomallei PFGE_B T6
        Burkholderia species BGJ
        Burkholderia species K24
        Burkholderia zhejiangensis CEIB S4-3
        Campylobacter jejuni 5070
        Cellvibrio mixtus subsp. mixtus J3-8
        Chelonobacter oris 1662
        Chromobacterium haemolyticum T124
        Chryseobacterium species P1-3
        Clostridium botulinum CFSAN024410
        Clostridium botulinum DB-2
        Clostridium botulinum KAPB-3
        Clostridium butyricum INCQS635
        Corynebacterium pseudotuberculosis MB20
        Cryobacterium roopkundense RuG17
        Cystobacter violaceus Cb vi76
        Devosia species LC5
        Enterobacter cloacae S611
        Escherichia coli 2011EL-1251-4
        Escherichia coli 2011EL-1369-1
        Escherichia coli 2011EL-1370-2
        Escherichia coli 2011EL-1497-2
        Escherichia coli 2011EL-1640-5
        Escherichia coli 2013EL-1319
        Escherichia coli 2013EL-1320-c5
        Escherichia coli CS02
        Escherichia coli CS03
        Escherichia coli CS05
        Escherichia coli F5995
        Escherichia coli F6097
        Escherichia coli M9803
        Escherichia coli UCD_JA03
        Escherichia coli UCD_JA03_pb
        Escherichia coli UCD_JA17
        Escherichia coli UCD_JA17_pb
        Escherichia coli UCD_JA23
        Escherichia coli UCD_JA23_pb
        Escherichia coli UCD_JA62
        Escherichia coli UCD_JA62_pb
        Escherichia coli UCD_JA65
        Escherichia coli UCD_JA65_pb
        Escherichia coli UCD_JA69
        Escherichia coli UCD_JA69_pb
        Escherichia coli VKPM B-10182
        Gammaproteobacteria bacterium MFB021
        Geobacillus stearothermophilus 22
        Geobacillus stearothermophilus 53
        Haliea rubra
        Helicobacter muridarum ST1
        Helicobacter species MIT 01-6451
        Helicobacter species MIT 03-1614
        Helicobacter species MIT 03-1616
        Helicobacter species MIT 05-5293
        Helicobacter species MIT 11-5569
        Helicobacter trogontum
        Helicobacter typhlonius MIT 98-6810
        Hoeflea species BAL378
        Jejuia pallidilutea
        Kingella kingae
        Klebsiella pneumoniae BAMC 07-18
        Lactobacillus mucosae CRL573
        Lactobacillus plantarum CMPG5300
        Lactobacillus plantarum FMNP01
        Lactobacillus sakei wikim 22
        Lactobacillus species wkB10
        Lactococcus lactis subsp. lactis CECT 4433
        Leptospirillum ferriphilum
        Leuconostoc citreum
        Leuconostoc mesenteroides P45
        Lysinimicrobium mangrovi
        Mangrovibacter species MFB070
        Mangrovimonas yunxiaonensis LY01
        Massilia species BSC265
        Massilia species LC238
        Methanococcoides methylutens
        Methylobacterium species L2-4
        Microvirga species BSC39
        Mycobacterium tuberculosis VRFCWCF XDRTB 232
        Neisseria meningitidis 2419
        Nitrincola species A-D6
        Nonlabens sediminis
        Nonlabens ulvanivorans
        Nonlabens ulvanivorans
        Nonlabens ulvanivorans
        Nonlabens ulvanivorans
        Phaeodactylibacter xiamenensis KD52
        Photobacterium aphoticum
        Photorhabdus luminescens LN2-M1
        Photorhabdus temperata subsp. temperata Meg1
        Piscirickettsia salmonis A1-15972
        Pseudoalteromonas species ND6B
        Pseudoalteromonas species PLSV
        Pseudomonas aeruginosa
        Pseudomonas aeruginosa PA_ST235
        Pseudomonas savastanoi pv. savastanoi DAPP-PG722
        Rhizobium species H41
        Rickettsia hoogstraalii Croatica
        Saccharopolyspora rectivirgula
        Shigella flexneri
        Sphingomonas species FUKUSWIS1
        Sphingopyxis species LC363
        Sphingopyxis species LC81
        Sphingopyxis species MWB1
        Sporocytophaga myxococcoides PG-01
        Staphylococcus aureus DAR3894
        Streptococcus agalactiae ENC06
        Streptococcus agalactiae FNA07
        Streptococcus agalactiae FPrA02
        Streptococcus phocae C-4
        Streptomyces fradiae
        Streptomyces species JS01
        Sulfitobacter species CB2047
        Taylorella equigenitalis MCE529
        Thalassospira species NP3b2
        Thalassotalea species ND16A
        Tumebacillus flagellatus GST4
        Vibrio cholerae InDRE 3140
        Vibrio cholerae VCC19
        Vibrio navarrensis
        Vibrio navarrensis 0053-83
        Vibrio navarrensis 08-2462
        Vibrio ponticus
        Vibrio vulnificus

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   Monthly Updates:

        With changes in this release -

        allenz      azymes      bairoch     bairochc    bionet
        bionetc     cadgene     clonemgr    cutzymes    dnasis
        dnasis5     emboss_e    emboss_r    endnote     endnotea
        gcg         gcgenz      gcgref      genepro     geneproc
        generunr    genetyx     gtype2      gtype2c     itype2
        nar         neos        NEWS        orgref      parsrefs
        procite     procitea    proto       pubrefs     pubrefsa
        refmgr      refmgra     seqaidii    staden      strider
        striderc    type2       type2ref    withref     withrefm

        No changes to -

                    commdata    emboss_s    homing      staract

        Gene Runner supplier files - no changes



Happy New Year!

Rich and Dana                                                   Dec 30 2014

