plot2 module <object>
This module defines the default visibility and color of the
various objects that can be displayed. These objects are:
positive contours (i.e. those with level > 0)
negative contours (i.e. those with level < 0)
column slices (vertical slices of the plane)
row slices (horizontal slices of the plane)
crosshair
grid
ruler
background
The color for the background is used only for the 2D display
and it not used when saving the display to an output file.
The visibility setting for the background is not used.
- {positive contours : negative contours : column slices :
row slices : crosshair : grid : ruler : background} <object>
-
Which of these is selected determines which objects
are being considered (more than one may be selected).
The first four are used for each data set, the last
four being associated with the display.
- {color} <object_color>
-
The color of the selected objects (when set). Changing
this for the first four objects determines the default
color for those data sets that are extracted *after* this
change is made.
- {visible : invisible} <object_visible>
-
This (partly) determines whether the selected objects are
displayed. For the first four objects this makes the object
for all the data sets invisible, if that is chosen, and
othewise each data set is visible depending on whether it
is selected and whether this object has been made visible
for this particular data set.
- {# major ticks} <major_ticks>
-
This determines the spacing for the major ticks of the
ruler (which includes the numbering) and also the grid.
The value given here is the lower bound actually used.
(5 seems to give reasonable results.)
If two values are given then the first value is the
number of major ticks in the x direction and the second
value is the number of ticks in the y direction.
- {# minor ticks} <minor_ticks>
-
This determines the spacing for the minor ticks of the
ruler, and should be more than the number of major ticks.
The value given here is the lower bound actually used.
(20 seems to give reasonable results.)
If two values are given then the first value is the
number of minor ticks in the x direction and the second
value is the number of ticks in the y direction.
- {apply} <apply>
-
Calculate the contours and display the result.
The current parameters (e.g. the region and contour
object) as defined are the ones used.
- {get} <get>
-
Get the color and visibility of the first of the selected
objects.
- {set} <set>
-
Set the color and visibility of all of the selected
objects from the current choice.
- {dismiss}
-
Close the module (the parameters are remembered).
- {help}
-
Display this message.
Azara help: plot2/object / W. Boucher / azara@bioc.cam.ac.uk