plot2 module <object>

This module defines the default visibility and color of the various objects that can be displayed. These objects are:

	positive contours (i.e. those with level > 0)
	negative contours (i.e. those with level < 0)
	column slices (vertical slices of the plane)
	row slices (horizontal slices of the plane)
	crosshair
	grid
	ruler
	background
The color for the background is used only for the 2D display and it not used when saving the display to an output file. The visibility setting for the background is not used.
{positive contours : negative contours : column slices : row slices : crosshair : grid : ruler : background} <object>
Which of these is selected determines which objects are being considered (more than one may be selected). The first four are used for each data set, the last four being associated with the display.

{color} <object_color>
The color of the selected objects (when set). Changing this for the first four objects determines the default color for those data sets that are extracted *after* this change is made.

{visible : invisible} <object_visible>
This (partly) determines whether the selected objects are displayed. For the first four objects this makes the object for all the data sets invisible, if that is chosen, and othewise each data set is visible depending on whether it is selected and whether this object has been made visible for this particular data set.

{# major ticks} <major_ticks>
This determines the spacing for the major ticks of the ruler (which includes the numbering) and also the grid. The value given here is the lower bound actually used. (5 seems to give reasonable results.) If two values are given then the first value is the number of major ticks in the x direction and the second value is the number of ticks in the y direction.

{# minor ticks} <minor_ticks>
This determines the spacing for the minor ticks of the ruler, and should be more than the number of major ticks. The value given here is the lower bound actually used. (20 seems to give reasonable results.) If two values are given then the first value is the number of minor ticks in the x direction and the second value is the number of ticks in the y direction.

{apply} <apply>
Calculate the contours and display the result. The current parameters (e.g. the region and contour object) as defined are the ones used.

{get} <get>
Get the color and visibility of the first of the selected objects.

{set} <set>
Set the color and visibility of all of the selected objects from the current choice.

{dismiss}
Close the module (the parameters are remembered).

{help}
Display this message.

Azara help: plot2/object / W. Boucher / azara@bioc.cam.ac.uk