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mse |
% mse dna.msf msf::mse.msf Multiple Sequence Editor |
Go to the input files for this example
Go to the output files for this example
Standard (Mandatory) qualifiers: [-sequence] seqset File containing a sequence alignment [-outseq] seqoutset [ |
Standard (Mandatory) qualifiers | Allowed values | Default | |
---|---|---|---|
[-sequence] (Parameter 1) |
File containing a sequence alignment | Readable set of sequences | Required |
[-outseq] (Parameter 2) |
Sequence set filename and optional format (output USA) | Writeable sequences | |
Additional (Optional) qualifiers | Allowed values | Default | |
(none) | |||
Advanced (Unprompted) qualifiers | Allowed values | Default | |
(none) |
!!NA_MULTIPLE_ALIGNMENT dna.msf MSF: 120 Type: N January 01, 1776 12:00 Check: 3196 .. Name: MSFM1 Len: 120 Check: 8587 Weight: 1.00 Name: MSFM2 Len: 120 Check: 6178 Weight: 1.00 Name: MSFM3 Len: 120 Check: 8431 Weight: 1.00 // MSFM1 ACGTACGTAC GTACGTACGT ACGTACGTAC GTACGTACGT ACGTACGTAC MSFM2 ACGTACGTAC GTACGTACGT ....ACGTAC GTACGTACGT ACGTACGTAC MSFM3 ACGTACGTAC GTACGTACGT ACGTACGTAC GTACGTACGT CGTACGTACG MSFM1 GTACGTACGT ACGTACGTAC GTACGTACGT ACGTACGTAC GTACGTACGT MSFM2 GTACGTACGT ACGTACGTAC GTACGTACGT ACGTACGTAC GTACGTACGT MSFM3 TACGTACGTA CGTACGTACG TACGTACGTA ACGTACGTAC GTACGTACGT MSFM1 ACGTACGTAC GTACGTACGT MSFM2 ACGTACGTTG CAACGTACGT MSFM3 ACGTACGTAC GTACGTACGT |
!!NA_MULTIPLE_ALIGNMENT 1.0 mse.msf MSF: 120 Type: N 15/07/06 CompCheck: 2784 .. Name: MSFM1 Len: 120 Check: 8587 Weight: 1.00 Name: MSFM2 Len: 120 Check: 5766 Weight: 1.00 Name: MSFM3 Len: 120 Check: 8431 Weight: 1.00 // 1 50 MSFM1 ACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTAC MSFM2 ACGTACGTACGTACGTACGTacgt....ACGTACGTACGTACGTACGTAC MSFM3 ACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTCGTACGTACG 51 100 MSFM1 GTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGT MSFM2 GTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGT MSFM3 TACGTACGTACGTACGTACGTACGTACGTAACGTACGTACGTACGTACGT 101 120 MSFM1 ACGTACGTACGTACGTACGT MSFM2 ACGTACGTTGCAACGTACGT MSFM3 ACGTACGTACGTACGTACGT |
Program name | Description |
---|---|
emma | Multiple alignment program - interface to ClustalW program |
infoalign | Information on a multiple sequence alignment |
plotcon | Plot quality of conservation of a sequence alignment |
prettyplot | Displays aligned sequences, with colouring and boxing |
showalign | Displays a multiple sequence alignment |
tranalign | Align nucleic coding regions given the aligned proteins |