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@article{Martyna1996,
author = {Cao, J. and Martyna, G. J.},
journal = {The Journal of Chemical Physics},
number = {5},
pages = {2028},
title = {Adiabatic path integral molecular dynamics methods. II. Algorithms},
volume = {104},
year = {1996}
}
@article{LeBard2012,
author = {LeBard, David N. and Levine, Benjamin G. and Mertmann, Philipp and Barr, Stephen A. and Jusufi, Arben and Sanders, Samantha and Klein, Michael L. and Panagiotopoulos, Athanassios Z.},
journal = {Soft Matter},
title = {Self-assembly of coarse-grained ionic surfactants accelerated by graphics processing units},
volume = {8},
year = {2012}
}
@article{Yu2010,
author = {Yu, Tang-Qing and Alejandre, Jos\'{e} and L\'{o}pez-Rend\'{o}n, Roberto and Martyna, Glenn J. and Tuckerman, Mark E.},
journal = {Chemical Physics},
pages = {294--305},
title = {Measure-preserving integrators for molecular dynamics in the isothermal–isobaric ensemble derived from the Liouville operator},
volume = {370},
year = {2010}
}
@article{Phillips2011,
author = {Phillips, Carolyn L. and Anderson, Joshua A. and Glotzer, Sharon C.},
journal = {Journal of Computational Physics},
pages = {7191--7201},
title = {Pseudo-random number generation for Brownian dynamics and dissipative particle dynamics simulations on GPU devices},
volume = {230},
year = {2011}
}
@article{Levine2011,
author = {Levine, Benjamin G. and LeBard, David N. and DeVane, Russell and Shinoda, Wataru and Kohlmeyer, Axel and Klein, Michael L.},
journal = {Journal of Chemical Theory and Computation},
pages = {4135--4145},
title = {Micellization studied by GPU-accelerated coarse-grained molecular dynamics},
volume = {7},
year = {2011}
}
@article{Berendsen1984,
author = {Berendsen, H. J. C. and Postma, J. P. M. and van Gunsteren, W. F. and DiNola, A. and Haak, J. R.},
journal = {The Journal of Chemical Physics},
pages = {3684},
title = {Molecular dynamics with coupling to an external bath},
volume = {81},
year = {1984}
}
@article{Plimpton1995,
author = {Plimpton, Steve},
journal = {J. Comp. Phys.},
pages = {1--19},
title = {Fast Parallel Algorithms for Short-Range Molecular Dynamics},
volume = {117},
year = {1995}
}
@article{Bond1999,
author = {Bond, Stephen D and Leimkuhler, Benedict J and Laird, Brian B},
journal = {Journal of Computational Physics},
pages = {114--134},
title = {The Nose-Poincare Method for Constant Temperature Molecular Dynamics},
volume = {151},
year = {1999}
}
@article{Kamberaj2005,
author = {Kamberaj, H and Low, R J and Neal, M P},
journal = {The Journal of chemical physics},
pages = {224114},
title = {Time reversible and symplectic integrators for molecular dynamics simulations of rigid molecules.},
volume = {122},
year = {2005}
}
@article{Martyna1994,
author = {Martyna, Glenn J. and Tobias, Douglas J. and Klein, Michael L.},
journal = {The Journal of Chemical Physics},
number = {5},
pages = {4177},
title = {Constant pressure molecular dynamics algorithms},
volume = {101},
year = {1994}
}
@article{Nguyen2011,
author = {Nguyen, Trung Dac and Phillips, Carolyn L. and Anderson, Joshua A. and Glotzer, Sharon C.},
journal = {Computer Physics Communications},
pages = {2307--2313},
title = {Rigid body constraints realized in massively-parallel molecular dynamics on graphics processing units},
volume = {182},
year = {2011}
}
@article{Miller2002,
author = {Miller, T. F. and Eleftheriou, M. and Pattnaik, P. and Ndirango, A. and Newns, D. and Martyna, G. J.},
journal = {The Journal of Chemical Physics},
pages = {8649},
title = {Symplectic quaternion scheme for biophysical molecular dynamics},
volume = {116},
year = {2002}
}
@article{Morozov2011,
author = {Morozov, I.V. and Kazennov, A.M. and Bystryi, R.G. and Norman, G.E. and Pisarev, V.V. and Stegailov, V.V.},
journal = {Computer Physics Communications},
pages = {1974--1978},
title = {Molecular dynamics simulations of the relaxation processes in the condensed matter on GPUs},
volume = {182},
year = {2011}
}

@article{Allen2006,
author = {Allen, Michael P. and Germano, Guido},
journal = {Molecular Physics},
number = {20-21},
pages = {3225--3235},
title = {Expressions for forces and torques in molecular simulations using rigid bodies},
volume = {104},
year = {2006}
}

@article{Tuckerman2006,
author = {Tuckerman, Mark E and Alejandre, Jos\'{e} and L\'{o}pez-Rend\'{o}n, Roberto and Jochim, Andrea L and Martyna, Glenn J},
journal = {Journal of Physics A: Mathematical and General},
pages = {5629--5651},
title = {A Liouville-operator derived measure-preserving integrator for molecular dynamics simulations in the isothermal–isobaric ensemble},
volume = {39},
year = {2006}
}

@article{Toxvaerd2011,
author = {Toxvaerd, S\o ren and Dyre, Jeppe C},
journal = {The Journal of chemical physics},
pages = {081102},
title = {Communication: Shifted forces in molecular dynamics.},
volume = {134},
year = {2011}
}
