Data Model version 2.0.6
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Class: Cell


    Cell is a subclass of AbstractComponent. The information on the cell component.
Attributes
Link Attributes
Attribute Methods
Link Attribute Methods
Class Methods
Factory Methods
Other Methods
Appendix

Inheritance:


Details:

Parent: link refSampleComponentStore to class RefSampleComponentStore
Main key: name
Mandatory Attributes: name
Known Subclasses: None
Children:
link componentDbRefs to class ComponentDbRef
link labels to class Label
Constructor: newObj = Cell( refSampleComponentStore,name=value, ... )

Attributes (in package)

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Attribute Type Multiplicity Description
competentMethod Text 0..1 The method used to obtain competent cells.  
cultureCollection Text 0..1 N/A  
details String 0..1 Detail field for comments.  
divided Text 0..1 N/A  
features Text 0..1 The specific properties of the cell. e.g. 'cannot used galactose'.  
name Line 1..1 The name of the component. Unique identifier.  
phase Text 0..1 N/A  
synonyms Line 0..* The synonyms of the component.  

Inherited Attributes (not in package): applicationDataclassNamefieldNamesinConstructorisDeletedmetaclasspackageNamepackageShortNamequalifiedName

Link Attributes (in package)

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Attribute Type Multiplicity Description
categories ccp.api.lims.Classification.SampleComponentCategory 0..* List of category associated to a component.  
componentDbRefs ComponentDbRef 0..* (Child link). child link to class ComponentDbRef  
compositeElements CompositeElement 0..* List of element where the component is part of a composite.  
labels Label 0..* (Child link). child link to class Label  
naturalSource ccp.api.general.Taxonomy.NaturalSource 0..1 The natural source of the component.  
parent RefSampleComponentStore 1..1 link to parent object - synonym for refSampleComponentStore  
refSampleComponentStore RefSampleComponentStore 1..1 (Parent link). parent link  

Inherited Attributes (not in package): accessactiveAccessroottopObject

Attribute Methods (in package)

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Attribute Method Return Parameters Comment
competentMethod
getCompetentMethod Text -
setCompetentMethod - Text
cultureCollection
getCultureCollection Text -
setCultureCollection - Text
details
getDetails String -
setDetails - String
divided
getDivided Text -
setDivided - Text
features
getFeatures Text -
setFeatures - Text
name
getName Line -
setName - Line
phase
getPhase Text -
setPhase - Text
synonyms
getSynonyms Line Tuple -
setSynonyms - Line List
addSynonym - Line
removeSynonym - Line

Link Attribute Methods (in package)

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Attribute Method Return Parameters Comment
categories
getCategories ccp.api.lims.Classification.SampleComponentCategory Set -
setCategories - ccp.api.lims.Classification.SampleComponentCategory Set
sortedCategories ccp.api.lims.Classification.SampleComponentCategory List -
addCategory - ccp.api.lims.Classification.SampleComponentCategory
removeCategory - ccp.api.lims.Classification.SampleComponentCategory
findFirstCategory ccp.api.lims.Classification.SampleComponentCategory keyword=value pairs
findAllCategories ccp.api.lims.Classification.SampleComponentCategory Set keyword=value pairs
componentDbRefs
getComponentDbRefs ComponentDbRef Set -
sortedComponentDbRefs ComponentDbRef List -
findFirstComponentDbRef ComponentDbRef keyword=value pairs
findAllComponentDbRefs ComponentDbRef Set keyword=value pairs
compositeElements
getCompositeElements CompositeElement Set -
setCompositeElements - CompositeElement Set
sortedCompositeElements CompositeElement List -
findFirstCompositeElement CompositeElement keyword=value pairs
findAllCompositeElements CompositeElement Set keyword=value pairs
labels
getLabels Label Set -
sortedLabels Label List -
findFirstLabel Label keyword=value pairs
findAllLabels Label Set keyword=value pairs
naturalSource
getNaturalSource ccp.api.general.Taxonomy.NaturalSource -
setNaturalSource - ccp.api.general.Taxonomy.NaturalSource
parent
getParent RefSampleComponentStore -
refSampleComponentStore
getRefSampleComponentStore RefSampleComponentStore -

Class Methods (in package)

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Method Return Parameters Comment
checkValid - Boolean
checkAllValid - Boolean
getByKey Cell memops.api.Implementation.MemopsObject, Any List static
getFullKey Any List Boolean
getLocalKey Any -
get Any String
set - String, Any

Factory Methods (in package)

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Method Return Parameters
newComponentDbRef ComponentDbRef dbRef, ...
newLabel Label labelName, labelType, ...

Other Methods (in package)

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Method Return Parameters Comment
None

Appendix

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guid:

www.ccpn.ac.uk_Fogh_2006-08-16-14:22:52_00061

isImplicit:

False

Tag

Value
repositoryId $Id: Cell.xml,v 1.46 2011-01-13 14:40:33 rhfogh Exp $

Tag

Value
repositoryTag $Name: not supported by cvs2svn $

Special constructor code:

None

Special destructor code:

None

Constraints:

None
Known inward one-way links: None
  Data Model Version 2.0.6
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  Autogenerated by  PyApiDocGen  revision 1.3   on  Wed Aug 7 15:06:33 2013    from data model package  ccp.api.lims.RefSampleComponent.Cell   revision 1.46  
  Work done by the CCPN team.
www.ccpn.ac.uk