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Class: Chain


    Chain of Molecular System coordinate description.
Attributes
Link Attributes
Attribute Methods
Link Attribute Methods
Class Methods
Factory Methods
Other Methods
Appendix

Inheritance:


Details:

Parent: link structureEnsemble to class StructureEnsemble
Main key: code
Mandatory Attributes: code
Known Subclasses: None
Children:
link residues to class Residue
Constructor: newObj = Chain( structureEnsemble,code=value, ... )

Attributes (in package)

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Attribute Type Multiplicity Description
code Line 1..1 Chain code - key for object.  

Inherited Attributes (not in package): applicationDataclassNamefieldNamesinConstructorisDeletedmetaclasspackageNamepackageShortNamequalifiedName

Link Attributes (in package)

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Attribute Type Multiplicity Description
chain ccp.api.molecule.MolSystem.Chain 1..1 Derived. MolSystem Chain, coresponding to Coordinate Chain  
chainValidations ccp.api.molecule.Validation.ChainValidation 0..* Validation results that include Chain  
parent StructureEnsemble 1..1 link to parent object - synonym for structureEnsemble  
residues Residue 0..* (Child link). child link to class Residue  
structureEnsemble StructureEnsemble 1..1 (Parent link). parent link  

Inherited Attributes (not in package): accessactiveAccessroottopObject

Attribute Methods (in package)

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Attribute Method Return Parameters Comment
code
getCode Line -
setCode - Line

Link Attribute Methods (in package)

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Attribute Method Return Parameters Comment
chain
getChain ccp.api.molecule.MolSystem.Chain - non-std.
chainValidations
getChainValidations ccp.api.molecule.Validation.ChainValidation Set -
setChainValidations - ccp.api.molecule.Validation.ChainValidation Set
sortedChainValidations ccp.api.molecule.Validation.ChainValidation List -
addChainValidation - ccp.api.molecule.Validation.ChainValidation
removeChainValidation - ccp.api.molecule.Validation.ChainValidation
findFirstChainValidation ccp.api.molecule.Validation.ChainValidation keyword=value pairs
findAllChainValidations ccp.api.molecule.Validation.ChainValidation Set keyword=value pairs
parent
getParent StructureEnsemble -
residues
getResidues Residue Set -
sortedResidues Residue List -
findFirstResidue Residue keyword=value pairs
findAllResidues Residue Set keyword=value pairs
structureEnsemble
getStructureEnsemble StructureEnsemble -

Class Methods (in package)

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Method Return Parameters Comment
checkValid - Boolean
checkAllValid - Boolean
getByKey Chain memops.api.Implementation.MemopsObject, Any List static
getFullKey Any List Boolean
getLocalKey Any -
get Any String
set - String, Any

Factory Methods (in package)

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Method Return Parameters
newResidue Residue seqCode, seqId, ...

Other Methods (in package)

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Method Return Parameters Comment
None

Appendix

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guid:

www.ccpn.ac.uk_Fogh_2006-08-16-14:22:55_00002

isImplicit:

False

Tag

Value
repositoryId $Id: Chain.xml,v 1.53 2011-01-13 14:40:34 rhfogh Exp $

Tag

Value
repositoryTag $Name: not supported by cvs2svn $

Special constructor code:

None

Special destructor code:

None

Constraints:

None
Known inward one-way links: None
  Data Model Version 2.0.6
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  Autogenerated by  PyApiDocGen  revision 1.3   on  Wed Aug 7 15:06:38 2013    from data model package  ccp.api.molecule.MolStructure.Chain   revision 1.53  
  Work done by the CCPN team.
www.ccpn.ac.uk