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Class: MolResLink


    Link (bond) between two molResidues, through their MolResLinkEnds. MolResLinks that are valid for a Molecule are implicitly valid also for Chains linked to that Molecule. Unlike MolResLinkEnds, MolResLinks can be created (or modified) for existing molecules, even if the Molecule is linked to one or more Chains. This allows linkages to be redefined, or to be left as initially unknown (as in the case of a protein with unknown disulfide binding topology).
Attributes
Link Attributes
Attribute Methods
Link Attribute Methods
Class Methods
Factory Methods
Other Methods
Appendix

Inheritance:


Details:

Parent: link molecule to class Molecule
Main key: molResLinkEnds
Mandatory Attributes: molResLinkEnds
Known Subclasses: None
Children: None
Constructor: newObj = MolResLink( molecule,molResLinkEnds=value, ... )

Attributes (in package)

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Attribute Type Multiplicity Description
dihedralAngle LinkDihedralAngle 0..1 Approximate value in degrees of dihedral angle formed across bond (as defined in the ChemComp Link definitions). The value is not precise but serves to indicate the conformation of rotationally hindered bonds.  
isStdLinear Boolean 0..1 Derived. Is the link a standard linear polymer link, i.e. a link between MolResidue with consecutive serials, with linkend linkcode 'next' and 'prev'  

Inherited Attributes (not in package): applicationDataclassNamefieldNamesinConstructorisDeletedmetaclasspackageNamepackageShortNamequalifiedName

Link Attributes (in package)

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Attribute Type Multiplicity Description
molResLinkEnds MolResLinkEnd 2..2 LinkEnds that make up the MolSystemLink  
molecule Molecule 1..1 (Parent link). parent link  
parent Molecule 1..1 link to parent object - synonym for molecule  

Inherited Attributes (not in package): accessactiveAccessroottopObject

Attribute Methods (in package)

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Attribute Method Return Parameters Comment
dihedralAngle
getDihedralAngle LinkDihedralAngle -
setDihedralAngle - LinkDihedralAngle
isStdLinear
getIsStdLinear Boolean - non-std.

Link Attribute Methods (in package)

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Attribute Method Return Parameters Comment
molResLinkEnds
getMolResLinkEnds MolResLinkEnd Set -
setMolResLinkEnds - MolResLinkEnd Set
sortedMolResLinkEnds MolResLinkEnd List -
findFirstMolResLinkEnd MolResLinkEnd keyword=value pairs
findAllMolResLinkEnds MolResLinkEnd Set keyword=value pairs
molecule
getMolecule Molecule -
parent
getParent Molecule -

Class Methods (in package)

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Method Return Parameters Comment
checkValid - Boolean
checkAllValid - Boolean
getByKey MolResLink memops.api.Implementation.MemopsObject, Any List static
getFullKey Any List Boolean
getLocalKey Any -
get Any String
set - String, Any

Factory Methods (in package)

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Method Return Parameters
None

Other Methods (in package)

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Method Return Parameters Comment
None

Appendix

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guid:

www.ccpn.ac.uk_Fogh_2006-08-16-14:22:54_00049

isImplicit:

False

Tag

Value
repositoryId $Id: MolResLink.xml,v 1.49 2011-01-13 14:40:34 rhfogh Exp $

Tag

Value
repositoryTag $Name: not supported by cvs2svn $

Special constructor code:

None

Special destructor code:

None

Constraints:

None
Known inward one-way links: None
  Data Model Version 2.0.6
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  Autogenerated by  PyApiDocGen  revision 1.3   on  Wed Aug 7 15:06:29 2013    from data model package  ccp.api.molecule.Molecule.MolResLink   revision 1.49  
  Work done by the CCPN team.
www.ccpn.ac.uk