Index

A | C | D | E | F | G | I | M | N | O | P | R | S | T | U | W | Z

A

addPeak() (in module ccpnmr.analysis.core.PeakBasic)
addPeakResonancesToSeqSpinSystems() (in module ccpnmr.analysis.core.AssignmentBasic)
addPeakResonancesToSpinSystem() (in module ccpnmr.analysis.core.AssignmentBasic)
addPeakToSelected() (in module ccpnmr.analysis.core.PeakBasic)
addSpinSystemResonance() (in module ccpnmr.analysis.core.AssignmentBasic)
aliasedPeakDimPosition() (in module ccpnmr.analysis.core.AssignmentBasic)
(in module ccpnmr.analysis.core.PeakBasic)
alignCoordinates() (in module ccpnmr.analysis.core.StructureBasic)
alignStructures() (in module ccpnmr.analysis.core.StructureBasic)
areAtomsBound() (in module ccpnmr.analysis.core.MoleculeBasic)
areAtomsTocsyLinked() (in module ccpnmr.analysis.core.MoleculeBasic)
arePeaksAssignedSame() (in module ccpnmr.analysis.core.PeakBasic)
areResonancesBound() (in module ccpnmr.analysis.core.MoleculeBasic)
areResonancesProchiral() (in module ccpnmr.analysis.core.AssignmentBasic)
assignAtomsToRes() (in module ccpnmr.analysis.core.AssignmentBasic)
assignPeak() (in module ccpnmr.analysis.core.WindowBasic)
assignPeakDim() (in module ccpnmr.analysis.core.AssignmentBasic)
assignPeakDimComponentCoupling() (in module ccpnmr.analysis.core.CouplingBasic)
assignPeakDimComponentResonance() (in module ccpnmr.analysis.core.CouplingBasic)
assignPrimaryClusterCoupling() (in module ccpnmr.analysis.core.CouplingBasic)
assignResonanceResidue() (in module ccpnmr.analysis.core.AssignmentBasic)
assignResonanceType() (in module ccpnmr.analysis.core.AssignmentBasic)
assignResToDim() (in module ccpnmr.analysis.core.AssignmentBasic)
assignSpinSystemResidue() (in module ccpnmr.analysis.core.AssignmentBasic)
assignSpinSystemType() (in module ccpnmr.analysis.core.AssignmentBasic)
assignTentativeAtoms() (in module ccpnmr.analysis.core.AssignmentBasic)
assignTentativeSpinSystemResidues() (in module ccpnmr.analysis.core.AssignmentBasic)
autoPeakLabelPos() (in module ccpnmr.analysis.core.WindowBasic)
averageJCouplingValue() (in module ccpnmr.analysis.core.CouplingBasic)
averageShiftValue() (in module ccpnmr.analysis.core.AssignmentBasic)

C

calcContourLevels() (in module ccpnmr.analysis.core.ExperimentBasic)
calcT2List() (in module ccpnmr.analysis.core.DataAnalysisBasic)
calculateKarplusCoupling() (in module ccpnmr.analysis.core.CouplingBasic)
calculateKarplusCouplings() (in module ccpnmr.analysis.core.CouplingBasic)
calculateNoise() (in module ccpnmr.analysis.core.WindowBasic)
ccpnmr.analysis.core.AssignmentBasic (module)
ccpnmr.analysis.core.ChemicalShiftBasic (module)
ccpnmr.analysis.core.ConstraintBasic (module)
ccpnmr.analysis.core.CouplingBasic (module)
ccpnmr.analysis.core.DataAnalysisBasic (module)
ccpnmr.analysis.core.ExperimentBasic (module)
ccpnmr.analysis.core.MarkBasic (module)
ccpnmr.analysis.core.MergeObjects (module)
ccpnmr.analysis.core.MoleculeBasic (module)
ccpnmr.analysis.core.PeakBasic (module)
ccpnmr.analysis.core.PrintBasic (module)
ccpnmr.analysis.core.QualityControlBasic (module)
ccpnmr.analysis.core.StructureBasic (module)
ccpnmr.analysis.core.Util (module)
ccpnmr.analysis.core.ValidationBasic (module)
ccpnmr.analysis.core.WindowBasic (module)
centerAxisRegion() (in module ccpnmr.analysis.core.WindowBasic)
centerCoordinates() (in module ccpnmr.analysis.core.StructureBasic)
centerStructures() (in module ccpnmr.analysis.core.StructureBasic)
centerWindow() (in module ccpnmr.analysis.core.WindowBasic)
changeSpectrumContourLevels() (in module ccpnmr.analysis.core.Util)
changeSpectrumNContours() (in module ccpnmr.analysis.core.ExperimentBasic)
checkContourRegion() (in module ccpnmr.analysis.core.PeakBasic)
clearPeakDim() (in module ccpnmr.analysis.core.AssignmentBasic)
clearResonancePeakDimContribs() (in module ccpnmr.analysis.core.AssignmentBasic)
clearSeqSpinSystemLinks() (in module ccpnmr.analysis.core.AssignmentBasic)
cloneSpectrumWindow() (in module ccpnmr.analysis.core.WindowBasic)
compareEnsembles() (in module ccpnmr.analysis.core.StructureBasic)
contourLevelsDown() (in module ccpnmr.analysis.core.WindowBasic)
contourLevelsUp() (in module ccpnmr.analysis.core.WindowBasic)
copyFixedResonance() (in module ccpnmr.analysis.core.ConstraintBasic)
copyMolecule() (in module ccpnmr.analysis.core.MoleculeBasic)
copyPeakList() (in module ccpnmr.analysis.core.PeakBasic)
copyPeakListNew() (in module ccpnmr.analysis.core.PeakBasic)
copySpectrumWindowRegions() (in module ccpnmr.analysis.core.WindowBasic)
copySpectrumWindowViewProperties() (in module ccpnmr.analysis.core.WindowBasic)
couplingNotifiers() (in module ccpnmr.analysis.core.CouplingBasic)
createHorizontalRuler() (in module ccpnmr.analysis.core.WindowBasic)
createMark() (in module ccpnmr.analysis.core.WindowBasic)
createNonPeakMark() (in module ccpnmr.analysis.core.MarkBasic)
createPeakDimRuler() (in module ccpnmr.analysis.core.MarkBasic)
createPeakMark() (in module ccpnmr.analysis.core.MarkBasic)
createRuler() (in module ccpnmr.analysis.core.MarkBasic)
createSidebandHorizontalRulers() (in module ccpnmr.analysis.core.WindowBasic)
createSidebandMarks() (in module ccpnmr.analysis.core.WindowBasic)
createSidebandVerticalRulers() (in module ccpnmr.analysis.core.WindowBasic)
createSpectrumWindow() (in module ccpnmr.analysis.core.WindowBasic)
createVerticalRuler() (in module ccpnmr.analysis.core.WindowBasic)

D

DataFitting (class in ccpnmr.analysis.core.DataAnalysisBasic)
deassignResonance() (in module ccpnmr.analysis.core.AssignmentBasic)
defaultWindowName() (in module ccpnmr.analysis.core.WindowBasic)
delete() (ccpnmr.analysis.core.DataAnalysisBasic.DataFitting method)
deleteCluster() (in module ccpnmr.analysis.core.CouplingBasic)
deletePeak() (in module ccpnmr.analysis.core.PeakBasic)
deleteSelected() (in module ccpnmr.analysis.core.WindowBasic)
displayPeakStrips() (in module ccpnmr.analysis.core.WindowBasic)
displaySpinSystemStrips() (in module ccpnmr.analysis.core.WindowBasic)
displayStrips() (in module ccpnmr.analysis.core.WindowBasic)
doPeaksOverlap() (in module ccpnmr.analysis.core.PeakBasic)
duplicateResidueAssignments() (in module ccpnmr.analysis.core.MoleculeBasic)
dynamicAlign() (in module ccpnmr.analysis.core.MoleculeBasic)

E

endPositionDelta() (in module ccpnmr.analysis.core.WindowBasic)
exportAriaTbl() (in module ccpnmr.analysis.core.ConstraintBasic)

F

findBoundResonances() (in module ccpnmr.analysis.core.MoleculeBasic)
findClosePeaks() (in module ccpnmr.analysis.core.PeakBasic)
findConnectedSpinSystem() (in module ccpnmr.analysis.core.AssignmentBasic)
findConnectedSpinSystems() (in module ccpnmr.analysis.core.AssignmentBasic)
findDataDimAxisMapping() (in module ccpnmr.analysis.core.WindowBasic)
findDataDimRegions() (in module ccpnmr.analysis.core.PeakBasic)
findFirstAtomShiftInShiftList() (in module ccpnmr.analysis.core.AssignmentBasic)
findMatchingChain() (in module ccpnmr.analysis.core.MoleculeBasic)
findMatchingChains() (in module ccpnmr.analysis.core.MoleculeBasic)
findMatchingCouplings() (in module ccpnmr.analysis.core.CouplingBasic)
findMatchingMolSystemAtom() (in module ccpnmr.analysis.core.StructureBasic)
findMatchingPeakDimShifts() (in module ccpnmr.analysis.core.AssignmentBasic)
findMatchingPeaks() (in module ccpnmr.analysis.core.PeakBasic)
findMatchingShifts() (in module ccpnmr.analysis.core.AssignmentBasic)
findNumAliasing() (in module ccpnmr.analysis.core.PeakBasic)
findOrthogonalWindows() (in module ccpnmr.analysis.core.WindowBasic)
findPeakBoxValues() (in module ccpnmr.analysis.core.PeakBasic)
findPeaks() (in module ccpnmr.analysis.core.PeakBasic)
findPeakVolume() (in module ccpnmr.analysis.core.PeakBasic)
findPositionMatches() (in module ccpnmr.analysis.core.PeakBasic)
findResonanceSet() (in module ccpnmr.analysis.core.AssignmentBasic)
findSameAssignmentPeaks() (in module ccpnmr.analysis.core.PeakBasic)
findShiftDistPeakMatches() (in module ccpnmr.analysis.core.PeakBasic)
findSpectrumDimsByIsotope() (in module ccpnmr.analysis.core.ExperimentBasic)
findSpinSystem() (in module ccpnmr.analysis.core.AssignmentBasic)
findSymmetryPeaks() (in module ccpnmr.analysis.core.PeakBasic)
findWindowTransposes() (in module ccpnmr.analysis.core.WindowBasic)
fit() (ccpnmr.analysis.core.DataAnalysisBasic.DataFitting method)
fitPeaks() (in module ccpnmr.analysis.core.PeakBasic)
functionFitData() (in module ccpnmr.analysis.core.DataAnalysisBasic)

G

getAcqExpDim() (in module ccpnmr.analysis.core.ExperimentBasic)
getAcqRefExpDimRef() (in module ccpnmr.analysis.core.ExperimentBasic)
getActiveWindows() (in module ccpnmr.analysis.core.WindowBasic)
getAliasedPeakDimPositions() (in module ccpnmr.analysis.core.AssignmentBasic)
(in module ccpnmr.analysis.core.PeakBasic)
getAmbigProchiralLabel() (in module ccpnmr.analysis.core.AssignmentBasic)
getAnalysisDataDim() (in module ccpnmr.analysis.core.Util)
getAnalysisProfile() (in module ccpnmr.analysis.core.Util)
getAnalysisProject() (in module ccpnmr.analysis.core.Util)
getAnalysisSpectrum() (in module ccpnmr.analysis.core.Util)
getAtomSetCoords() (in module ccpnmr.analysis.core.StructureBasic)
getAtomSetsDihedral() (in module ccpnmr.analysis.core.StructureBasic)
getAtomSetsDistance() (in module ccpnmr.analysis.core.StructureBasic)
getAtomSetShifts() (in module ccpnmr.analysis.core.AssignmentBasic)
getAtomsTorsion() (in module ccpnmr.analysis.core.MoleculeBasic)
getAverageHue() (in module ccpnmr.analysis.core.Util)
getAxisRegionRegion() (in module ccpnmr.analysis.core.WindowBasic)
getBestChemComp() (in module ccpnmr.analysis.core.StructureBasic)
getBestMolType() (in module ccpnmr.analysis.core.StructureBasic)
getBestNamingSystem() (in module ccpnmr.analysis.core.StructureBasic)
getBoundAtoms() (in module ccpnmr.analysis.core.MoleculeBasic)
getBoundResonances() (in module ccpnmr.analysis.core.AssignmentBasic)
getCentreOfMass() (in module ccpnmr.analysis.core.StructureBasic)
getChainResidueMapping() (in module ccpnmr.analysis.core.MoleculeBasic)
getChemAtomNmrRef() (in module ccpnmr.analysis.core.MoleculeBasic)
getChemCompOverview() (in module ccpnmr.analysis.core.MoleculeBasic)
getChemicalShiftBounds() (in module ccpnmr.analysis.core.MoleculeBasic)
getClosestPeak() (in module ccpnmr.analysis.core.DataAnalysisBasic)
(in module ccpnmr.analysis.core.PeakBasic)
getClusterCoupling() (in module ccpnmr.analysis.core.CouplingBasic)
getConstraintAtoms() (in module ccpnmr.analysis.core.ConstraintBasic)
getConstraintStoreResonances() (in module ccpnmr.analysis.core.ConstraintBasic)
getCoupledExpDims() (in module ccpnmr.analysis.core.CouplingBasic)
getCouplingAnnotations() (in module ccpnmr.analysis.core.CouplingBasic)
getCouplingAtomResonances() (in module ccpnmr.analysis.core.CouplingBasic)
getCouplingDataDimRef() (in module ccpnmr.analysis.core.CouplingBasic)
getCouplingDimAnnotation() (in module ccpnmr.analysis.core.CouplingBasic)
getCouplingTolerance() (in module ccpnmr.analysis.core.CouplingBasic)
getDataDimAxisMapping() (in module ccpnmr.analysis.core.WindowBasic)
getDataDimFullShiftRange() (in module ccpnmr.analysis.core.AssignmentBasic)
getDataDimIsotopes() (in module ccpnmr.analysis.core.ExperimentBasic)
getDataDimMapping() (in module ccpnmr.analysis.core.PeakBasic)
getDataDimRefFullRange() (in module ccpnmr.analysis.core.ExperimentBasic)
getDataDimRefMapping() (in module ccpnmr.analysis.core.PeakBasic)
getDataSlice() (in module ccpnmr.analysis.core.ExperimentBasic)
getDiagonalBondedDataDims() (in module ccpnmr.analysis.core.ExperimentBasic)
getDiagonalExclusion() (in module ccpnmr.analysis.core.PeakBasic)
getDiagonalExclusions() (in module ccpnmr.analysis.core.PeakBasic)
getDistancesFromIntensity() (in module ccpnmr.analysis.core.ConstraintBasic)
getEnsembleValidationStore() (in module ccpnmr.analysis.core.ValidationBasic)
getEquivalentDataDims() (in module ccpnmr.analysis.core.ExperimentBasic)
getEquivalentWindows() (in module ccpnmr.analysis.core.WindowBasic)
getExclusionInfo() (in module ccpnmr.analysis.core.PeakBasic)
getExperimentConditionSet() (in module ccpnmr.analysis.core.DataAnalysisBasic)
getExperimentJCouplingList() (in module ccpnmr.analysis.core.CouplingBasic)
getExperimentSampledDim() (in module ccpnmr.analysis.core.ExperimentBasic)
getExperimentSpectra() (in module ccpnmr.analysis.core.ExperimentBasic)
getFilteredRefExperiments() (in module ccpnmr.analysis.core.ExperimentBasic)
getFitMethodInfo() (in module ccpnmr.analysis.core.DataAnalysisBasic)
getFixedAtomSet() (in module ccpnmr.analysis.core.ConstraintBasic)
getFixedResonance() (in module ccpnmr.analysis.core.ConstraintBasic)
getFixedResonanceName() (in module ccpnmr.analysis.core.AssignmentBasic)
getHueSortedColorSchemes() (in module ccpnmr.analysis.core.Util)
getIndirectDataDims() (in module ccpnmr.analysis.core.ExperimentBasic)
getIndirectThroughSpaceIsotopes() (in module ccpnmr.analysis.core.ExperimentBasic)
getIntensityDistanceTable() (in module ccpnmr.analysis.core.ConstraintBasic)
getIsotopeWeightedTolerances() (in module ccpnmr.analysis.core.PeakBasic)
getIsSpectrumBigEndian() (in module ccpnmr.analysis.core.ExperimentBasic)
getJCouplingsFromConstraint() (in module ccpnmr.analysis.core.ConstraintBasic)
getLinkedResidue() (in module ccpnmr.analysis.core.MoleculeBasic)
getMeanCoords() (in module ccpnmr.analysis.core.StructureBasic)
getMeanPeakIntensity() (in module ccpnmr.analysis.core.ConstraintBasic)
getMeanStrucCoords() (in module ccpnmr.analysis.core.StructureBasic)
getMinMaxValues() (in module ccpnmr.analysis.core.ExperimentBasic)
getMolTypeCcpCodes() (in module ccpnmr.analysis.core.MoleculeBasic)
getNdSpectra() (in module ccpnmr.analysis.core.ExperimentBasic)
getNmrExpSeriesSampleConditions() (in module ccpnmr.analysis.core.DataAnalysisBasic)
getNoeDistance() (in module ccpnmr.analysis.core.ConstraintBasic)
getNoesyPeakLists() (in module ccpnmr.analysis.core.ExperimentBasic)
getNoiseEstimate() (in module ccpnmr.analysis.core.ExperimentBasic)
getNumConnectingBonds() (in module ccpnmr.analysis.core.MoleculeBasic)
getOnebondDataDims() (in module ccpnmr.analysis.core.ExperimentBasic)
getOnebondExpDimRefs() (in module ccpnmr.analysis.core.ExperimentBasic)
getOnebondResonance() (in module ccpnmr.analysis.core.AssignmentBasic)
getOverlapScore() (in module ccpnmr.analysis.core.DataAnalysisBasic)
getPeakAnnotation() (in module ccpnmr.analysis.core.PeakBasic)
getPeakDimAtomTuple() (in module ccpnmr.analysis.core.AssignmentBasic)
getPeakDimAxisMapping() (in module ccpnmr.analysis.core.WindowBasic)
getPeakDimComponentSplitting() (in module ccpnmr.analysis.core.CouplingBasic)
getPeakDimFullShiftRange() (in module ccpnmr.analysis.core.AssignmentBasic)
getPeakDimPosition() (in module ccpnmr.analysis.core.PeakBasic)
getPeakDimPpm() (in module ccpnmr.analysis.core.AssignmentBasic)
(in module ccpnmr.analysis.core.PeakBasic)
getPeakDimTolerance() (in module ccpnmr.analysis.core.ConstraintBasic)
getPeakHeight() (in module ccpnmr.analysis.core.PeakBasic)
getPeakIntensity() (in module ccpnmr.analysis.core.PeakBasic)
getPeakListsPeakClusters() (in module ccpnmr.analysis.core.CouplingBasic)
getPeakMatchRegion() (in module ccpnmr.analysis.core.DataAnalysisBasic)
(in module ccpnmr.analysis.core.PeakBasic)
getPeakSampledDimIntensities() (in module ccpnmr.analysis.core.DataAnalysisBasic)
getPeaksClusters() (in module ccpnmr.analysis.core.CouplingBasic)
getPeakSeriesIntensities() (in module ccpnmr.analysis.core.DataAnalysisBasic)
getPeaksOverlapScore() (in module ccpnmr.analysis.core.PeakBasic)
getPeakVolume() (in module ccpnmr.analysis.core.PeakBasic)
getPeakWindowPosition() (in module ccpnmr.analysis.core.WindowBasic)
getPossibleRefExperiments() (in module ccpnmr.analysis.core.ExperimentBasic)
getPrimaryDataDimRef() (in module ccpnmr.analysis.core.ExperimentBasic)
getPrimaryExpDimRef() (in module ccpnmr.analysis.core.ExperimentBasic)
getRandomCoilShift() (in module ccpnmr.analysis.core.MoleculeBasic)
getRandomCoilShiftCorrectionsDict() (in module ccpnmr.analysis.core.MoleculeBasic)
getRandomSubset() (in module ccpnmr.analysis.core.ExperimentBasic)
getRefExperimentCategories() (in module ccpnmr.analysis.core.ExperimentBasic)
getRefExperiments() (in module ccpnmr.analysis.core.ExperimentBasic)
getRepeatingAxes() (in module ccpnmr.analysis.core.WindowBasic)
getResidueCode() (in module ccpnmr.analysis.core.MoleculeBasic)
getResidueJCoupling() (in module ccpnmr.analysis.core.CouplingBasic)
getResidueMapping() (in module ccpnmr.analysis.core.MoleculeBasic)
getResidueObservableAtoms() (in module ccpnmr.analysis.core.MoleculeBasic)
getResiduePhiPsi() (in module ccpnmr.analysis.core.StructureBasic)
getResidueResonances() (in module ccpnmr.analysis.core.AssignmentBasic)
getResonanceAtomTuple() (in module ccpnmr.analysis.core.AssignmentBasic)
getResonanceLabellingFraction() (in module ccpnmr.analysis.core.AssignmentBasic)
getResonanceMolSystem() (in module ccpnmr.analysis.core.AssignmentBasic)
getResonanceName() (in module ccpnmr.analysis.core.AssignmentBasic)
getResonancePairLabellingFraction() (in module ccpnmr.analysis.core.AssignmentBasic)
getResonanceResidue() (in module ccpnmr.analysis.core.AssignmentBasic)
getRmsd() (in module ccpnmr.analysis.core.StructureBasic)
getSampledDimExperiments() (in module ccpnmr.analysis.core.ExperimentBasic)
getSeqAssignRefExperiments() (in module ccpnmr.analysis.core.ExperimentBasic)
getSeqSpinSystemLinks() (in module ccpnmr.analysis.core.AssignmentBasic)
getSequenceResidueMapping() (in module ccpnmr.analysis.core.MoleculeBasic)
getShiftLists() (in module ccpnmr.analysis.core.AssignmentBasic)
getSpectra() (in module ccpnmr.analysis.core.ExperimentBasic)
getSpectraByType() (in module ccpnmr.analysis.core.ExperimentBasic)
getSpectrumIsotopes() (in module ccpnmr.analysis.core.ExperimentBasic)
getSpectrumMultipletPattern() (in module ccpnmr.analysis.core.CouplingBasic)
getSpectrumNoise() (in module ccpnmr.analysis.core.ExperimentBasic)
getSpectrumViews() (in module ccpnmr.analysis.core.WindowBasic)
getSpectrumWindowView() (in module ccpnmr.analysis.core.WindowBasic)
getSpinSystemChemComps() (in module ccpnmr.analysis.core.AssignmentBasic)
getSpinSystemLinksLabel() (in module ccpnmr.analysis.core.PeakBasic)
getSpinSystemResidues() (in module ccpnmr.analysis.core.AssignmentBasic)
getSpinSystemWindowShifts() (in module ccpnmr.analysis.core.WindowBasic)
getStructureCoordinates() (in module ccpnmr.analysis.core.StructureBasic)
getStructureFromFile() (in module ccpnmr.analysis.core.StructureBasic)
getStructureViolations() (in module ccpnmr.analysis.core.ConstraintBasic)
getSyntheticShiftLists() (in module ccpnmr.analysis.core.AssignmentBasic)
getThroughSpaceDataDims() (in module ccpnmr.analysis.core.ExperimentBasic)
getThroughSpacePeakLists() (in module ccpnmr.analysis.core.ExperimentBasic)
getUnicodeAtomName() (in module ccpnmr.analysis.core.MoleculeBasic)
getUnicodeGreek() (in module ccpnmr.analysis.core.MoleculeBasic)
getViewMinMaxValues() (in module ccpnmr.analysis.core.WindowBasic)
getWindowAxisTypes() (in module ccpnmr.analysis.core.WindowBasic)
getWindowFrameCanvas() (in module ccpnmr.analysis.core.WindowBasic)
getWindowFrameCanvasLocation() (in module ccpnmr.analysis.core.WindowBasic)
getWindowPaneName() (in module ccpnmr.analysis.core.WindowBasic)
gotoResonancePosition() (in module ccpnmr.analysis.core.WindowBasic)
greekSortAtomNames() (in module ccpnmr.analysis.core.MoleculeBasic)

I

initExpBoundResonances() (in module ccpnmr.analysis.core.ExperimentBasic)
initExpTransfers() (in module ccpnmr.analysis.core.ExperimentBasic)
initResonance() (in module ccpnmr.analysis.core.AssignmentBasic)
initWindowMacros() (in module ccpnmr.analysis.core.WindowBasic)
isActiveWindow() (in module ccpnmr.analysis.core.WindowBasic)
isAtomAssigned() (in module ccpnmr.analysis.core.AssignmentBasic)
isChainAssigned() (in module ccpnmr.analysis.core.AssignmentBasic)
isDataBigEndian() (in module ccpnmr.analysis.core.ExperimentBasic)
isOnebondMismatched() (in module ccpnmr.analysis.core.AssignmentBasic)
isPeakAssigned() (in module ccpnmr.analysis.core.AssignmentBasic)
isPeakInRegion() (in module ccpnmr.analysis.core.PeakBasic)
isReferencingIncorrect() (in module ccpnmr.analysis.core.ExperimentBasic)
isResidueAssigned() (in module ccpnmr.analysis.core.AssignmentBasic)
isResidueInRange() (in module ccpnmr.analysis.core.ConstraintBasic)
(in module ccpnmr.analysis.core.DataAnalysisBasic)
isShapeSpectrum() (in module ccpnmr.analysis.core.ExperimentBasic)
isShiftInRange() (in module ccpnmr.analysis.core.AssignmentBasic)
isSpectrum() (in module ccpnmr.analysis.core.ExperimentBasic)
isSpectrumBigEndian() (in module ccpnmr.analysis.core.ExperimentBasic)
isSpectrumInWindowPane() (in module ccpnmr.analysis.core.WindowBasic)

M

makeAmbigDistConstraints() (in module ccpnmr.analysis.core.ConstraintBasic)
makeAtomSet() (in module ccpnmr.analysis.core.MoleculeBasic)
makeAtomSetMapping() (in module ccpnmr.analysis.core.MoleculeBasic)
makeAtomSetsGuiName() (in module ccpnmr.analysis.core.AssignmentBasic)
makeDataList() (in module ccpnmr.analysis.core.DataAnalysisBasic)
makeDistConstraints() (in module ccpnmr.analysis.core.ConstraintBasic)
makeEnsemble() (in module ccpnmr.analysis.core.StructureBasic)
makeFixedResonance() (in module ccpnmr.analysis.core.ConstraintBasic)
makeGuiMultiAtomSet() (in module ccpnmr.analysis.core.MoleculeBasic)
makeGuiName() (in module ccpnmr.analysis.core.MoleculeBasic)
makeIntermediatePeak() (in module ccpnmr.analysis.core.PeakBasic)
makeMolSystemLink() (in module ccpnmr.analysis.core.MoleculeBasic)
makeMultipletPeakCluster() (in module ccpnmr.analysis.core.CouplingBasic)
makeNmrConstraintStore() (in module ccpnmr.analysis.core.ConstraintBasic)
makeNonStereoName() (in module ccpnmr.analysis.core.MoleculeBasic)
makePdbFromStructure() (in module ccpnmr.analysis.core.StructureBasic)
makePeakAnnotation() (in module ccpnmr.analysis.core.PeakBasic)
makePeakDimAnnotation() (in module ccpnmr.analysis.core.AssignmentBasic)
makePeakListFromShifts() (in module ccpnmr.analysis.core.PeakBasic)
makePeaksFromConstraints() (in module ccpnmr.analysis.core.ConstraintBasic)
makeRandomCoilShiftList() (in module ccpnmr.analysis.core.ChemicalShiftBasic)
makeRatesList() (in module ccpnmr.analysis.core.DataAnalysisBasic)
makeResidueAtomSets() (in module ccpnmr.analysis.core.MoleculeBasic)
makeResidueAtomSetsEquivalent() (in module ccpnmr.analysis.core.MoleculeBasic)
makeResidueAtomSetsNonEquivalent() (in module ccpnmr.analysis.core.MoleculeBasic)
makeResidueLocTag() (in module ccpnmr.analysis.core.MoleculeBasic)
makeResonanceGuiName() (in module ccpnmr.analysis.core.AssignmentBasic)
makeSeqSpinSystemLink() (in module ccpnmr.analysis.core.AssignmentBasic)
makeStructureDictFromPdb() (in module ccpnmr.analysis.core.StructureBasic)
makeStructureDictFromRoughPdb() (in module ccpnmr.analysis.core.StructureBasic)
makeStructureGeneration() (in module ccpnmr.analysis.core.ConstraintBasic)
makeStructures() (in module ccpnmr.analysis.core.StructureBasic)
makeTransposePeakList() (in module ccpnmr.analysis.core.PeakBasic)
matchHnoePeaks() (in module ccpnmr.analysis.core.DataAnalysisBasic)
matchSampledExperimentPeaks() (in module ccpnmr.analysis.core.DataAnalysisBasic)
matchSeriesPeaks() (in module ccpnmr.analysis.core.DataAnalysisBasic)
mergeConstraintLists() (in module ccpnmr.analysis.core.ConstraintBasic)
mergeDuplicateConstraints() (in module ccpnmr.analysis.core.ConstraintBasic)
mergeObjects() (in module ccpnmr.analysis.core.MergeObjects)
mergePeaks() (in module ccpnmr.analysis.core.PeakBasic)
mergeResonances() (in module ccpnmr.analysis.core.AssignmentBasic)
mergeSpinSystems() (in module ccpnmr.analysis.core.AssignmentBasic)
moveConstraintToList() (in module ccpnmr.analysis.core.ConstraintBasic)
moveCoords() (in module ccpnmr.analysis.core.StructureBasic)
moveMolSystemChain() (in module ccpnmr.analysis.core.MoleculeBasic)
movePeak() (in module ccpnmr.analysis.core.PeakBasic)
(in module ccpnmr.analysis.core.WindowBasic)
movePeakAnnotation() (in module ccpnmr.analysis.core.WindowBasic)

N

ncontoursDecr() (in module ccpnmr.analysis.core.WindowBasic)
ncontoursIncr() (in module ccpnmr.analysis.core.WindowBasic)
newMolSystem() (in module ccpnmr.analysis.core.MoleculeBasic)
newPeakDimContrib() (in module ccpnmr.analysis.core.AssignmentBasic)
newResonance() (in module ccpnmr.analysis.core.AssignmentBasic)
newShiftList() (in module ccpnmr.analysis.core.ExperimentBasic)
newSpinSystem() (in module ccpnmr.analysis.core.AssignmentBasic)

O

orthogScrollLeft() (in module ccpnmr.analysis.core.WindowBasic)
orthogScrollRight() (in module ccpnmr.analysis.core.WindowBasic)

P

pairHnHaPeaks() (in module ccpnmr.analysis.core.DataAnalysisBasic)
pickPeak() (in module ccpnmr.analysis.core.PeakBasic)
popupMenu() (in module ccpnmr.analysis.core.WindowBasic)
ppmDataDimBoundedRegion() (in module ccpnmr.analysis.core.ExperimentBasic)
propagatePeakAssignments() (in module ccpnmr.analysis.core.AssignmentBasic)
propagatePeakUnaliasing() (in module ccpnmr.analysis.core.PeakBasic)
ptsDataDimBoundedRegion() (in module ccpnmr.analysis.core.ExperimentBasic)

R

refinePeakLabelPositions() (in module ccpnmr.analysis.core.WindowBasic)
refreshPeakAnnotations() (in module ccpnmr.analysis.core.PeakBasic)
removeAllMarksAndRulers() (in module ccpnmr.analysis.core.MarkBasic)
removeAssignmentNotifiers() (in module ccpnmr.analysis.core.AssignmentBasic)
removeCouplingNotifiers() (in module ccpnmr.analysis.core.CouplingBasic)
removeMarks() (in module ccpnmr.analysis.core.MarkBasic)
removePeakFromSelected() (in module ccpnmr.analysis.core.PeakBasic)
removePeaksAssignment() (in module ccpnmr.analysis.core.PeakBasic)
removeRulers() (in module ccpnmr.analysis.core.MarkBasic)
removeSpinSystemResonance() (in module ccpnmr.analysis.core.AssignmentBasic)
resetAll() (ccpnmr.analysis.core.DataAnalysisBasic.DataFitting method)
resetFit() (ccpnmr.analysis.core.DataAnalysisBasic.DataFitting method)
resetPeakLabelPositions() (in module ccpnmr.analysis.core.WindowBasic)
resetPeakLabelsPos() (in module ccpnmr.analysis.core.WindowBasic)
resetWindowSliceRange() (in module ccpnmr.analysis.core.WindowBasic)

S

saveProjectShortcut() (in module ccpnmr.analysis.core.WindowBasic)
searchPeaks() (in module ccpnmr.analysis.core.PeakBasic)
sequenceAlign() (in module ccpnmr.analysis.core.MoleculeBasic)
setAllIsotopeCodes() (in module ccpnmr.analysis.core.ExperimentBasic)
setAssignmentMolSystem() (in module ccpnmr.analysis.core.AssignmentBasic)
setExperimentShiftList() (in module ccpnmr.analysis.core.ExperimentBasic)
setIsSpectrumBigEndian() (in module ccpnmr.analysis.core.ExperimentBasic)
setManualPeakIntensity() (in module ccpnmr.analysis.core.PeakBasic)
setNonPeakMarkColor() (in module ccpnmr.analysis.core.MarkBasic)
setPeakDimNumAliasing() (in module ccpnmr.analysis.core.PeakBasic)
setPeakMarkColor() (in module ccpnmr.analysis.core.MarkBasic)
setPeakPosition() (in module ccpnmr.analysis.core.PeakBasic)
setQuickShiftList() (in module ccpnmr.analysis.core.AssignmentBasic)
setRefExperiment() (in module ccpnmr.analysis.core.ExperimentBasic)
setResidueJCoupling() (in module ccpnmr.analysis.core.CouplingBasic)
setResonanceTypeFromRefExp() (in module ccpnmr.analysis.core.AssignmentBasic)
setRulerColor() (in module ccpnmr.analysis.core.MarkBasic)
setSpectrumMultipletPattern() (in module ccpnmr.analysis.core.CouplingBasic)
setupAssignmentNotifiers() (in module ccpnmr.analysis.core.AssignmentBasic)
setupCouplingNotifiers() (in module ccpnmr.analysis.core.CouplingBasic)
setupPeak() (in module ccpnmr.analysis.core.PeakBasic)
setupPeakCoupling() (in module ccpnmr.analysis.core.PeakBasic)
setupPeakDataDimRef() (in module ccpnmr.analysis.core.PeakBasic)
setupPeakFit() (in module ccpnmr.analysis.core.PeakBasic)
setupPeakHeight() (in module ccpnmr.analysis.core.PeakBasic)
setupPeakLinewidth() (in module ccpnmr.analysis.core.PeakBasic)
setupPeakVolume() (in module ccpnmr.analysis.core.PeakBasic)
setWindowPeakListState() (in module ccpnmr.analysis.core.WindowBasic)
showSelectedPeaks() (in module ccpnmr.analysis.core.WindowBasic)
snapPeak() (in module ccpnmr.analysis.core.PeakBasic)
snapPeaks() (in module ccpnmr.analysis.core.PeakBasic)
(in module ccpnmr.analysis.core.WindowBasic)
splitConstraintListAmbigUnambig() (in module ccpnmr.analysis.core.ConstraintBasic)
splitConstraintListViol() (in module ccpnmr.analysis.core.ConstraintBasic)
splitResonance() (in module ccpnmr.analysis.core.AssignmentBasic)
startPositionDelta() (in module ccpnmr.analysis.core.WindowBasic)
structurePredictNoePeakList() (in module ccpnmr.analysis.core.PeakBasic)
swapProchiralResonance() (in module ccpnmr.analysis.core.AssignmentBasic)
swapSpinSystemResonances() (in module ccpnmr.analysis.core.AssignmentBasic)
swapStripAxis() (in module ccpnmr.analysis.core.WindowBasic)

T

togglePeakList() (in module ccpnmr.analysis.core.WindowBasic)
toggleSpectrum() (in module ccpnmr.analysis.core.WindowBasic)
transferChainAssignments() (in module ccpnmr.analysis.core.MoleculeBasic)
transferResidueAssignments() (in module ccpnmr.analysis.core.MoleculeBasic)
translateSpectrumUsingPeaks() (in module ccpnmr.analysis.core.PeakBasic)
translateWindowDown() (in module ccpnmr.analysis.core.WindowBasic)
translateWindowLeft() (in module ccpnmr.analysis.core.WindowBasic)
translateWindowRight() (in module ccpnmr.analysis.core.WindowBasic)
translateWindowUp() (in module ccpnmr.analysis.core.WindowBasic)
translationFraction() (in module ccpnmr.analysis.core.WindowBasic)

U

unitePeakPositions() (in module ccpnmr.analysis.core.WindowBasic)
unitePeakPositionsMulti() (in module ccpnmr.analysis.core.WindowBasic)
uniteResonancePeakPositions() (in module ccpnmr.analysis.core.PeakBasic)
updateAllShifts() (in module ccpnmr.analysis.core.AssignmentBasic)
updateAtomSetMapping() (in module ccpnmr.analysis.core.AssignmentBasic)
updateClusterAnnotation() (in module ccpnmr.analysis.core.CouplingBasic)
updateClusterAssignments() (in module ccpnmr.analysis.core.CouplingBasic)
updateComponentMeasurements() (in module ccpnmr.analysis.core.CouplingBasic)
updateContribNPeakDimAnnotation() (in module ccpnmr.analysis.core.CouplingBasic)
updateContribPeakDimAnnotation() (in module ccpnmr.analysis.core.AssignmentBasic)
updateDataDimShifts() (in module ccpnmr.analysis.core.AssignmentBasic)
updateDistConstraintFromPeakAssign() (in module ccpnmr.analysis.core.ConstraintBasic)
updateFixedResonance() (in module ccpnmr.analysis.core.ConstraintBasic)
updatePeakDimShifts() (in module ccpnmr.analysis.core.AssignmentBasic)
updatePeaksFromConstraints() (in module ccpnmr.analysis.core.ConstraintBasic)
updatePeakShifts() (in module ccpnmr.analysis.core.AssignmentBasic)
updateResidueAnnotation() (in module ccpnmr.analysis.core.AssignmentBasic)
updateResidueProbAnnotation() (in module ccpnmr.analysis.core.AssignmentBasic)
updateResonanceAnnotation() (in module ccpnmr.analysis.core.AssignmentBasic)
updateResonanceGroupAnnotation() (in module ccpnmr.analysis.core.AssignmentBasic)
updateResonanceSetAnnotation() (in module ccpnmr.analysis.core.AssignmentBasic)
updateResonShift() (in module ccpnmr.analysis.core.AssignmentBasic)
updateWindowPaneSliceRange() (in module ccpnmr.analysis.core.WindowBasic)
updateWindowPaneSliceRangeByView() (in module ccpnmr.analysis.core.WindowBasic)

W

windowPaneHasValueAxis() (in module ccpnmr.analysis.core.WindowBasic)

Z

zoomSliceRangeDown() (in module ccpnmr.analysis.core.WindowBasic)
zoomSliceRangeUp() (in module ccpnmr.analysis.core.WindowBasic)
zoomToShowPeaks() (in module ccpnmr.analysis.core.WindowBasic)
zoomWindowIn() (in module ccpnmr.analysis.core.WindowBasic)
zoomWindowOut() (in module ccpnmr.analysis.core.WindowBasic)
zoomWindowToSpectra() (in module ccpnmr.analysis.core.WindowBasic)