#!/usr/bin/env bash
#
###########################################################################
#
# This file is part of Celera Assembler, a software program that
# assembles whole-genome shotgun reads into contigs and scaffolds.
# Copyright (C) 1999-2004, Applera Corporation. All rights reserved.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received (LICENSE.txt) a copy of the GNU General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
#
###########################################################################
#
# $Id: getInterToResults.sh,v 1.6 2008/06/27 06:29:17 brianwalenz Exp $
#

chroms=(0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23)

for chrom in "${chroms[@]}"; do
  cat ???.out | gawk -v c=$chrom '{if($2=="mps"){if($17==c){a++;b+=$19-$18}else if($11==c){a++;b+=$7-$6}}}END{print c, a, "intervals", b, "bps"}'
done
