RNAlib-2.1.8
H Directory Reference
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Files

file  2Dfold.h [code]
file  2Dpfold.h [code]
file  ali_plex.h [code]
file  alifold.h [code]
 compute various properties (consensus MFE structures, partition function, Boltzmann distributed stochastic samples, ...) for RNA sequence alignments
file  aln_util.h [code]
file  cofold.h [code]
 MFE version of cofolding routines.
file  convert_epars.h [code]
 Functions and definitions for energy parameter file format conversion.
file  data_structures.h [code]
 All datastructures and typedefs shared among the Vienna RNA Package can be found here.
file  dist_vars.h [code]
 Global variables for Distance-Package.
file  duplex.h [code]
 Duplex folding function declarations...
file  edit_cost.h [code]
 global variables for Edit Costs included by treedist.c and stringdist.c
file  energy_const.h [code]
file  energy_par.h [code]
file  findpath.h [code]
 Compute direct refolding paths between two secondary structures.
file  fold.h [code]
 MFE calculations and energy evaluations for single RNA sequences.
file  fold_vars.h [code]
 Here all all declarations of the global variables used throughout RNAlib.
file  gquad.h [code]
 Various functions related to G-quadruplex computations.
file  inverse.h [code]
 Inverse folding routines.
file  Lfold.h [code]
 Predicting local MFE structures of large sequences.
file  loop_energies.h [code]
 Energy evaluation for MFE and partition function calculations.
file  LPfold.h [code]
 Function declarations of partition function variants of the Lfold algorithm.
file  MEA.h [code]
 Computes a MEA (maximum expected accuracy) structure.
file  mm.h [code]
 Several Maximum Matching implementations.
file  move_set.h [code]
file  naview.h [code]
file  pair_mat.h [code]
file  params.h [code]
file  part_func.h [code]
 Partition function of single RNA sequences.
file  part_func_co.h [code]
 Partition function for two RNA sequences.
file  part_func_up.h [code]
 Partition Function Cofolding as stepwise process.
file  PKplex.h [code]
file  plex.h [code]
file  plot_layouts.h [code]
 Secondary structure plot layout algorithms.
file  ProfileAln.h [code]
file  profiledist.h [code]
file  PS_dot.h [code]
 Various functions for plotting RNA secondary structures, dot-plots and other visualizations.
file  read_epars.h [code]
file  ribo.h [code]
file  RNAstruct.h [code]
 Parsing and Coarse Graining of Structures.
file  snofold.h [code]
file  snoop.h [code]
file  stringdist.h [code]
 Functions for String Alignment.
file  subopt.h [code]
 RNAsubopt and density of states declarations.
file  svm_utils.h [code]
file  treedist.h [code]
 Functions for Tree Edit Distances.
file  utils.h [code]
 Various utility- and helper-functions used throughout the Vienna RNA package.