RNAlib-2.1.8
Predicting Locally stable structures of large sequences
+ Collaboration diagram for Predicting Locally stable structures of large sequences:

Modules

 Local MFE structure Prediction and Z-scores
 Partition functions for locally stable secondary structures
 Local MFE consensus structures for Sequence Alignments

Files

file  Lfold.h
 Predicting local MFE structures of large sequences.

Detailed Description

Local structures can be predicted by a modified version of the fold() algorithm that restricts the span of all base pairs.