It is most useful when the input sequences are specified in a List file. The List file (file of sequence names) can be any set of sequences in files or database entries specified in the normal EMBOSS USA (which can include the spcification of sub-regions of the sequence, eg. 'em:hsfau[20,55]'). Specifying several such subregions in a sequence or sequences allows you to enter disjoint sequences to be joined.
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You may find the program yank useful for creating List files.
The result is a normal sequence file containing a single sequence resulting from the concatenation of the input sequences.
You may find the program yank useful for creating List files.